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TABLE OF CONTENTS
Chapter-1 Overview of Cancer and genes
Chapter-2 What Are Genes?
Chapter-3 Changes in Genes
Chapter-4 Oncogenes
Chapter-5 Tumor suppressor genes (emerogenes)
Chapter-6 Family Cancer Syndromes
Chapter-7 Gene Therapy for Cancer
Chapter-8 Understanding Genetic Testing for Cancer Risk
Chapter-1 Overview of Cancer and genes
Boveri observed that chromosomal changes are a feature of cancer, it has been thought
to be a disease caused primarily by alterations in the genome of the affected cells.
Today, the notion of cancer being a consequence of genetic alterations, is almost
intuitive and the advances in molecular biology and genomics have given us many tools
to understand and possibly to combat cancer. Since science has always existed in a
continuum, the genetic alterations in cancer have to be understood in the context of
cellular organization, differentiation, tissue organization host response and
susceptibility angiogenesis etc.
The properties that are taken to typify cancer cells are also present in normal cells.
These include cell division, migration and even invasion (as exemplified by the
trophoblast cells). However what marks out cancer cells is dysregulation and
inappropriate expression of these attributes. Typically the genetic alterations in cancer
can be said to include three major types of genes, oncogenes, tumour suppressor genes
and genes that preserve the integrity of the genome. It must be kept in mind that cancer
is a multi-step process and several genetic alterations are required for a full blown
cancer phenotype.
Oncogenes
These are today known to be cellular genes that when mutated and/ or inappropriately
expressed in a manner that increases their activity result in a malignant phenotype.
Classical examples include src, ras and myc oncogenes. These genes are very much the
key components of cellular regulatory processes eg. The src gene is codes for a tyrosine
kinase, the ras gene for a G protein and the myc gene for a nuclear protein that is
involved in DNA replication. Oncogenes were first discovered in acutely transforming
retroviruses (Rous Sarcoma Virus). When these viruses infect immortalized but
untransformed cells in culture they generate a neoplastic phenotype. It was
subsequently found that these viral oncogenes were not naturally occurring viral genes
but picked up from the cellular genome and subsequently mutated or over expressed to
generate cellular transformation. A single mutated oncogene cannot transform primary
cells and the requirement for oncogene cooperativity is in concordance with the multi
step theory of carcinogenesis derived from classical studies. Oncogene co-operavity
usually requires cooperation between oncogenes belonging to different groupings eg.
Nuclear.
Tumour Suppresor Genes (TSG)
These genes can be compared to the brakes of a car, and function in the cell to regulate
cell division. Loss of genetic matter is also a key event in the generation of neoplasia,
and the same can be demonstrated by cytogenetic techniques. Molecular tools have
been able to further define the loss of genetic matter. Typically there is loss of one allele
of a TSG while the other is inactivated by point mutation. The concepts of TSGs were
demonstrated first with the Retinoblastoma gene (RB). Commonly affected TSGs
include the p53 gene (affected in almost half the human malignancies) the Wilms
tumour gene the p16gene etc.
Genes controlling genomic integrity
These have also been called caretaker genes. Inactivation of such genes leads to
genomic instability and thus markedly increases the probability of alterations in the
oncogenes and the TSGs. DNA mismatch repair genes have been extensively studied
and include the hMSH2 and hMLH1 genes which are commonly affected in human
malignancies. Again as the case of most oncogenes and TSGs, homologues of such
genes can be traced back to the yeasts indicating the fundamental similarity of these
biological processes. DNA mismatch repair defects manifest as unusually rapid
expansion and contraction of microsatellite repeat sequences. Inherited defects in
such genes are exemplified in Hereditary Non Polyposis Colon Cancer (HNPCC), where
analysis of microsatellite repeats in leucocyte DNA forms a basis of diagnosing the
affected siblings in a family. The affected individuals are subjected to regular
investigations including colonoscopy. Increased genomic instability also includes
several other aspects, the implications of which are under study. These include
aneuploidy including genetic loss and translocations, increased frequency of point
mutations, other repeat mediated recombinations, increased tendency for gene
amplification etc. The p53 gene which has been described as the guardian of the
genome functions as both a caretaker gene and as a TSG. A similar role has been
attributed to the Brca II gene.
The instability of the cancer genome could contribute extensively to therapeutic
resistance, which is perhaps the most frustrating aspect of tumour therapy.
Viruses and Human Cancer
The viruses shown to be extensively involved in human cancer are the Hepatitis Viruses
(B and C) and the Human Papilloma Virus (HPV) which are involved in liver and cervical
cancers respectively. Several other viruses (like Herpes viruses) have also been
implicated from time to time. However there is not much hard evidence as yet for the
involvement of acutely transforming retroviruses. However Human T Cell Leukaemia
Viruses I and II have been shown to be involved in outbreaks of T cell leukemia
especially in Japan.
In terms of sheer numbers and morbidity and mortality, cervical and liver cancers are
both very important. While there are a number of significant publications regarding the
mechanistic basis of these cancers, it is important that these be treated as preventable
cancers. The Hepatitis B vaccine is also an important vaccine for cancer prevention.
Vaccines for HPV are at the experimental stages, however this knowledge could be
useful for early diagnosis screening and behavioral intervention.
Interaction of genes and environment
As most cancers are thought to have an environmental basis, there has been a lot of
work on looking at the genetic footprints of environmental carcinogens. This approach
has been successful for animal models for cancers induced by specific carcinogens.
However the same has not been generally true for human cancers. There has been an
extensive attempt to build up a data base of p53 mutations and establishing the
mutational spectrum of different cancers. While it is known that mutations in some p53
codons are more prevalent in cancer of a particular organ (eg oesophagus vs brain), the
fingerprint of a particular carcinogen has ben hard to define. The only exception has
been liver cancer in regions with a high exposure to aflatoxin which are shown to have a
mutation in codon 249. However this is not always true. This observation could be a
manifestation of different levels of aflatoxin exposure and or of other modifying factors
like DNA repair.
The Human Genome Project (HGP) and Microarray Technology in Cancer
No discussion of modern cancer genetics is complete without a mention of the Human
Genome Project and the role of microarray technology in the study of cancer genetics.
While a detailed discussion of the Human genome Project is beyond the scope of this
report, a detailed and precise knowledge of each individual gene and its regulatory
elements has contributed (along with other knowledge) to the identification of a number
of possible anti-cancer targets. This major quantitative and qualitative leap in our
knowledge and understanding of tumours promises to change our way of thinking about
cancer. The sheer power of microarray technology where one can study tens to
hundreds of thousands genetic segments in one experiment gives a picture of the global
nature of alterations in the cancer genome and gene expression, where earlier we had to
be content with studying a much smaller number of events. It is also expected that the
technological advances brought about by the HGP will translate themselves into
techniques that give the clinical laboratory much more investigative power than it
previously had.
Points of intervention
Genetic aspects of cancer potentially lend themselves to intervention in a variety of
ways. These include predictive, diagnostic, prognostic and therapeutic aspects.
However it is also a fact that right now most of the cancer interventions do not rely on
the knowledge derived from genetic studies on cancer. Nevertheless, there are strong
indications that this outlook is likely to change in the near future.
Drugs exploiting selective genetic and functional differences in cancer cells
Cancer therapy today is mostly based on anti-mitotics and this lack of selectivity results
in increased toxicity. However increasing knowledge of definite genetic alterations in
different classes of tumours can help in the design of drugs that will selectively attack
tumour cells. The drug gleevec has provided proof of the principle that specific tyrosine
kinase inhibitors can be used for cancer therapy, mainly related to CML, but also valid
for some other cancers as well. Similarly Epidermal Growth Factor Receptor based
protein kinase has also been targeted by small molecular weight inhibitors with
promising results. Another class of drugs are inhibitors of the farnesyl pathway. These
target mutant ras proteins as ras is anchored o the plasma membrane by a farnesyl tail.
Gleevec has been shown to be clinically effective. Looking at the number of drugs in
trials at various stages and the explosion in knowledge based drug design, the number
of such molecules is bound to increase. Another example that has been around for
some time is tamoxifen. If one goes by definition of oncogenes Estrogen Receptor also
functions as one in the context of breast cancer, and tamoxifen is a specific anti cancer
compound.
Small molecules no doubt have an advantage when it comes to therapy, however
derivatised oligonucleotides have been shown to have useful properties in terms of
specificity, stability and bioavailability and many eg anti c-myc oligos are in clinical
trials, often in conjunction with conventional chemotherapy. Inhibitor RNA technology
and ribozymes may be technologies of the future The examples so far are about
inhibiting the actions of mutant or hyperactive oncogenes. What about restoring the
functions of tumour suppressor genes? Gene therapy has been tried for restoring p53
function in a variety of tumours and shown to be effective in animal experiments and
clinical trials. However the results of restoring p53 are expected to vary from tumour to
tumour. Small molecules have also been designed to restore the function of mutant.
Antibody Based therapy in Cancer
Recombinant antibodies, including chimaeric and humanized antibodies have
revolutionized antibody based therapy, and currently form the class of recombinant
proteins in varicus stages of approval. Recombinant antibodies approved by the FDA
include Rituximab (for Non-Hodgkin Lyphoma), Trastuzumab (Breast cancer) and
Gemtuzumab (Acute myeloid leukaemia). Such antibodies target cell surface antigens
on the surface of malignant cells, and apart from their direct effects have been shown
to sensitize the tumour to other therapeutic modalities.
Diagnostic and Prognostic Markers
The immediate applicability of genetic studies to diagnostic and prognostic applications
is growing. As genes ultimately have to function through the increased expression of
proteins, IHC can play a role in addition to direct detection of genetic alterations. In
breast cancer HER IHC already has place in the management of estrogen receptor (ER)
negative cancer and herceptin has emerged as an emerging therapy for such tumours.
Using classical therapeutic modalities HER over expression is a negative prognostic
factor in breast cancer. Another oncogene that have been used for prognosis is Nmyc
and its amplification is associated with poor prognosis in neuroblastoma. There have
been a lot of studies on the mutational status of p53 in a variety of cancers but it is yet
to become an accepted part of therapeutic strategies.
Loss of hetrozygosity (LOH) in oligoastrocytomas has turned out to be a valuable
genetic marker of response to chemotherapy using procarbazine, carbamazipene and
vincristine (PCV). Since chemotherapy is costly and toxic and the genetic markers are
clearly able to distinguish responder from non responder genetic typing will soon
become an accepted part of management of such tumours.
Genetic markers from serum DNA: Tumours shed a considerable amount of DNA into
the serum, which could be utilized for determining the presence or recurrence of the
tumour and also give an indication of tumour load. This is technically difficult because
of the presence of a normal background. How ever some determinations like serum
mutant levels have lot of potential.
Molecular typing of hematological malignancies has an important role because
differences in behavior of different sub sets of leukemias and lymphomas. Molecular
probes include studies of T cell receptor re arrangement, BCR-ABL fusions etc. These
can be used for studies of tying, response to chemotherapy, follow up and the detection
of minimum residual disease.
While molecular markers have an important role in tumour staging, with increasing
knowledge of markers that may affect the transition from pre-neoplasia to neoplasia
may help identify potentially threatening esions at sites accessible for biopsy or FNAC.
These include tumours of the skin, breast, cervix, lymph nodes, liver etc.
Genetic Susceptibility to Cancer
While familial cancers do form a high percentage of the total cancer burden, they
remain a source of misery to the affected families. However the identification of specific
germ-line mutations provides an opportunity to identify susceptible individuals and
prevent or markedly improve the outcome by timely interventions. Similarly, those
individuals in the affected families who do not carry the mutations can be spared the
mental agony of uncertainty and the physical agony and costs of repeated screening.
This screening for mutations in Brcal I And Brca II genes in breast cancer families is an
established management strategy in the West. However before it is brought to Indian
situation the frequency of such mutations in familial breast cancer in India remains to
be determined. Li-Fraumeni’s syndrome is rare and characterized by the inheritance of a
mutated p53 gene. While these markers are not the stage to be incorporate into public
health programs it is expected that with continuing research more genetic indicators for
familial cancers will be discovered. Microsatellite instability is an indicator of HNPCC as
discussed earlier. This is offered as an investigation to the affected families in advanced
centers in the West.
The human genome project has brought an unprecedented amount of information, but
most of the data is of general nature and not suitable for direct extrapolation to the
diverse ethnic groups that constitute the Indian population. The Department of
Biotechnology has initiated a ‘People of India’ project to characterize the genetic make
up of these groups with reference to their ethnicity. It is expected that this research will
lead to the identification of suitable genetic markers (eg. Single nucleotide
polymorphisms and microsatellites) that indicate cancer susceptibilities of different
populations.
Genetics and toxicity
Genetics also has something to offer to individuals receiving conventional
chemotherapy. There is a considerable amount of literature linking various genetic
polymorphisms to drug metabolism and toxicity. It is expected that such genetic
signatures will constitute a major expect of planning drug regimens in neoplasia. This
also has the potential of reducing cost of management by tailoring chemotherapy to
those patients who benefit the most.
Policy Aspects Related to Genetics
As most of the information and interventions related to the genetics of cancer cells is
new and still evolving, it is difficult to assess the feasibility of each individual
component, However it is clear that the impact of new information and technology will
be felt on various aspects of cancer management
There is no doubt that the cost of cancer chemotherapy is prohibitive. The fact that the
results are often equivocal often make the costs unjustified. However, if because of the
identification of genetic targets in cancer cells, there is a increased efficacy and
reduced toxicity, resulting in increased cure rates or at least marked increase of quality
of life, policy decisions have to be taken to supply these ‘essential’ drugs of the future at
a reasonable cost. In an increasingly older population, with a correspondingly higher
demographic predisposition to cancer this issue will increasingly confront policy
makers. The issues of intellectual property, and the definition of what constitutes a life
saving drug that needs to be made available cheaply to the population will need to be
addressed.
Generic Production of Recombinant Proteins: a case for reducing costs
HBS Ag can be called a cancer vaccine, also many recombinant proteins like interferons
are important in cancer therapy. The technology for producing such recombinant
proteins is comparatively simple. For the moment product patents are not involved, and
anyway for these and several other recombinant products, the patents are expected to
expire soon. One aspect of policy intervention could be to reduce prices to better reflect
the low costs of production of several recombinant products like HBS Ag and
interferons. This will have a multiplier effect on healthcare.
Genetic predisposition to cancer: occupational and environmental exposure
It is expected that it will be possible (though not perhaps to a large extent in the near
future), an increasing number of individuals and groups with a significantly increased
susceptibility to cancer. They can be counseled about employment and other modes of
risk avoidance. However, like other similar offshore of the Human Genome Project an
ethical frame work needs is to be made where the right to privacy, various aspects of
discrimination at workplace, nature of health insurance etc can be incorporated into fair
and balanced guidelines.
Genetic aspects of drug trials and the incidence of toxicity
The incidence of drug toxicity in an individual is often unpredictable and because of the
occurrence of major toxic side effects in even a small percentage of individuals, many
drugs are permitted for use. It is expected that in the field of anti-cancer drugs, as for
other classes of drugs, genetic predictors of toxicity will be more precise. This will
reduce risks and individualize therapy to the most effective and least toxic’ combination
for any individual. However this requires significantly more research into the genetic
backgrounds of individuals, the various ethnic groups of India and clinical work ups of
individual patients.
Chapter-2 What Are Genes?
Genes are pieces of DNA (deoxyribonucleic acid) inside each cell that tell the cell what
to do and when to grow and divide. Each gene is made up of a specific DNA sequence
that contains the code (the) instructions) to make a certain protein, each of which has a
specific job or function in the body, Each human cell has about 25,000 genes,
Most genes are contained in chromosomes. A chromosome is a long strand of DNA
wrapped around a special protein called histone. Most chromosomes contain many
different genes. Most human cells contain 23 pairs of chromosomes-one pair of sex
chromosomes (either XX in females or XY in males) plus 22 pairs of non-sex
chromosomes called autosomes. Sperm and egg cells only contain half as many
chromosomes. Chromosomes are passed from parents to their children through sperm
and egg cells. One chromosome of each pair is inherited from the mother, and the other
comes from the father. This is why children look like their parents, and why they may
have a tendency to develop certain diseases that run in their families.
A cell uses its genes selectively; that is, it can turn on (or activate) the genes it needs at
the right moment and turn off other genes that it doesn’t need. All the cells in the body
(except egg and sperm) contain the same genes. Turning on some genes and turning off
others is how a cell becomes specialized. That is how a cell becomes a muscle cell and
not a bone cell, for example. Some genes stay active all the time to make proteins
needed for basic cell functions. Others shut down when their job is finished and start
again later if needed.
Dominant vs. Recessive genes
We have 2 versions (copies) of most genes – one from each parent. For some versions of
a gene, only one copy is needed to see a certain quality or disease (in genetics this is
called a trait). These genes are called dominant. If both copies have to be the same to
see that trait, it is called recessive. For example, the gene for brown eyes is dominant
while the gene for blue eyes is recessive, so if you get one copy of the brown eye gene
from one parent and a copy of the blue eye gene from the other, you will have brown
eyes. You will only get blue eyes if you get 2 copies of the blue eye gene (one from each
parent). This classification applies to gene mutations as well. If you only need to inherit
one copy of a gene mutation to get a disease or syndrome, it is called dominant. If you
need 2, it is called recessive.
X-linked genes
Things are a little different in terms of genes on the X chromosome. Normally, we each
have 2 sex chromosomes. Women have two X chromosomes, while males have one X
chromosome and one v chromosome. Since the Y chromosome contains different
genes than the X chromosome, males have only one copy of the genes on the X
chromosome. Some diseases/conditions are caused by genes on the X chromosome.
For some of these, like color blindness, a female has to have 2 copies of the gene (one
on each X chromosome) to get the condition. For a male though, he only has to have the
gene on his one X chromosome. Diseases and conditions like this are called Xlinked. X
linked conditions are more common in males.

Chapter-3 Changes in Genes
Gene mutations
Mutations are abnormal changes in the DNA of a gene. The building blocks of DNA are
called bases. The sequence of the bases determines the gene and its function.
Mutations involve changes in the arrangement of the bases that make up a gene. Even a
change in just one base among the thousands of bases that make up a gene can have a
major effect.
A gene mutation can affect the cell in many ways. Some mutations stop a protein from
being made at all. Others may change the protein that is made so that it no longer works
the way it should or it may not even work at all. Some mutations may cause a gene to be
turned on, and make more of the protein than usual. Some mutations don’t have a
noticeable effect, but others may lead to a disease. For example, a certain mutation in
the gene for hemoglobin causes the disease sickle cell anemia.
Cells become cancer cells largely because of mutations in their genes. Often many
mutations are needed before a cell becomes a cancer cell. The mutations may affect
different genes that control cell growth and division. Some of these genes are called
tumor suppressor genes. Mutations may also cause some normal genes to become
cancer-causing genes known as oncogenes (oncogenes and tumor suppressor genes
are discussed in more detail later).
We have 2 copies of most genes, one from each chromosome in a pair. In order for a
gene to stop working completely and potentially lead to cancer, both copies have to be
“knocked out” with mutations. That means for most genes, it takes 2 mutations to make
that gene stop working completely.
Types of mutations
There are 2 major types of gene mutations, inherited and acquired:
An inherited gene mutation is present in the egg or sperm that formed the child. After
the egg is fertilized by the sperm, it created one cell called a zygote that then divided to
create a fetus (which became a baby). Since all the cells in the body came from this first
cell, this kind of mutation is in every cell in the body (including some eggs or sperm) and
so can be passed on to the next generation. This type of mutation is also called germline
(because the cells that develop into eggs and sperm are called germ cells) or hereditary.
Inherited mutations are thought to be a direct cause of only a small fraction of cancers.
An acquired mutation is not present in the zygote, but is acquired some time later in life.
It occurs in one cell, and then is passed on to any new cells that are the offspring of that
cell. This kind of mutation is not present in the egg or sperm that formed the fetus, so it
cannot be passed on to the next generation. Acquired mutations are much more
common than inherited mutations. Most cancers are caused by acquired mutations.
This type of mutation is also called sporadic, or somatic.
Mutations and cancer
Experts agree that it takes more than one mutation in a cell for cancer to occur. When
someone has inherited an abnormal copy of a gene, though, their cells already start out
with one mutation. This makes it all the easier (and quicker) for enough mutations to
build up for a cell to become cancer. That is why cancers that are inherited tend to
occur earlier in life than cancers of the same type that are not inherited.
Even if you were born with healthy genes, some of them can become changed (mutated)
over the course of your life. These acquired mutations cause most cases of cancer.
Some acquired mutations can be caused by things that we are exposed to in our
environment, including cigarette smoke1, radiation2, hormones, and diet3. Other
mutations have no clear cause, and seem to occur randomly as the cells divide. In order
for a cell to divide to make 2 new cells, it has to copy all of its DNA. With so much DNA,
sometimes mistakes are made in the new copy (like typos). This leads to DNA changes
(mutations). Every time a cell divides, it is another opportunity for mutations to occur.
The numbers of gene mutations build up over time, which is why we have a higher risk of
cancer as we get older.
It is important to realize that gene mutations happen in our cells all the time. Usually,
the cell detects the change and repairs it. If it can’t be repaired, the cell will get a signal
telling it to die in a process called apoptosis. But if the cell doesn’t die and the mutation
is not repaired, it may lead to a person developing cancer. This is more likely if the
mutation affects a gene involved with cell division or a gene that normally causes a
defective cell to die.
Some people have a high risk of developing cancer because they have inherited
mutations in certain genes.
Penetrance
For dominant genes and mutations, the term penetrance is used to indicate the
proportion of those carrying a mutation who will have the trait, syndrome, or disease. If
all of the people who inherit the mutation have the disease, it is called complete
penetrance. If not all of the people who have the mutation get the disease, it is called
incomplete penetrance. In general, inherited mutations leading to cancer have
incomplete penetrance, meaning not everyone with the mutation will get cancer. That is
in part because although the person has a mutation in one copy of the gene, they need
to acquire at least one more mutation for the gene to stop working completely and
cancer to occur. Since not everyone gets the second mutation, not everyone gets
cancer. Incomplete penetrance can also be because even if the mutation makes it so
that a gene doesn’t function, other factors may be needed for the cancer to start.
High vs. Low penetrance
Gene mutations can cause large changes in the function of a gene. They may even
cause that copy of the gene to stop working altogether. When an inherited mutation has
a large enough effect on the function of a gene to cause a disease or noticeable
problem in most of the people who have it, that mutation is called “high penetrance.”
High-penetrance mutations in cancer susceptibility genes can lead to many people in a
family getting certain kinds of cancers – a family cancer syndrome5. These are thought
to cause only a small fraction of cancers that run in a family. For example, only about
1/5 of the breast cancer that runs in families is thought to be caused by high-penetrance
mutations in genes like BRCA1 and BRCA2.
Some inherited mutations, though, don’t seem to affect gene function very much and
don’t often cause obvious problems. These mutations are called “low-penetrance.” Low
penetrance mutations can affect cancer risk through subtle effects on things like
hormone levels, metabolism, or other things that interact with risk factors for cancer.
Low-penetrance mutations, together with gene variants (discussed below) are thought
to be responsible for most of the cancer risk that runs in families
Gene variants
People can also have different versions of genes that are not mutations. Common
differences in genes are called variants. These versions are inherited and are present in
every cell of the body. The most common type of gene variant involves a change in only
one base (nucleotide) of a gene. These are called single nucleotide polymorphisms
(SNPs, pronounced “snips”). There are estimated to be millions of SNPs in each
person’s DNA.
Other types of variants are less common. Many genes contain sequences of bases that
are repeated over and over. A common type of variant involves a change in the number
of these repeats.
Some variants have no apparent effect on the function of the gene. Others tend to
influence the function of genes in a subtle way, such as making them slightly more or
less active. These changes don’t cause cancer directly, but can make someone more
likely to get cancer by affecting things like hormone levels and metabolism. For
example, some gene variants affect levels of estrogen and progesterone, which can
affect the risk of breast6 and endometrial cancers. Others can affect the breakdown of
toxins in cigarette smoke, making a person more likely to get lung and other cancers.
Gene variants can also play a role in diseases that impact cancer risk – like diabetes
and obesity.
Variants and low-penetrance mutations can be similar. The main difference between
the two is how common they are. Mutations are rare, while gene variants are more
common.
Still, since these variants are common and someone can have many of them, their
effect can add up. Studies have shown that these variants can influence cancer risk
and, together with low penetrance mutations, they may account for a large part of the
cancer risk that runs in families.
Other ways cells change genes and gene activity
Although all of the cells of your body contain the same genes (and DNA), different genes
are active in some cells than in others. Even within a certain cell, some genes are active
at some times and inactive at others. Turning on and off of genes in this case isn’t based
on changes in the DNA sequence (like mutations), but by other means called epigenetic
changes.
DNA methylation: In this type of epigenetic change, a molecule called a methyl group
is attached to certain nucleotides. This changes the structure of the DNA so that the
gene can’t start the process of making the protein for which it codes (this process is
called transcription). This basically turns off the gene. In some people with a mutation in
one copy of a cancer susceptibility gene, the other copy of the gene becomes inactive
not by mutation, but by methylation.
Histone modification: Chromosomes are made up of DNA wrapped around proteins
called histones. Histone proteins can be changed by adding (or subtracting) something
called an acetyl group. Adding acetyl groups (acetylation) can activate (turn on) that
part of the chromosome, while taking them away (deacetylation) can deactivate it (turn
it off). Methylation is also used to activate and deactivate parts of chromosomes.
Histone proteins can also be changed by adding or subtracting methyl groups
(methylation and demethylation). Although abnormal histone modification isn’t known
to cause cancer, drugs that alter histone modifications can help in the treatment of
cancer by turning on genes that help control cell growth and division.
RNA interference: RNA (ribonucleic acid) is important inside cells as the middle step
that allows genes to code for proteins. But some small forms of RNA can interfere with
gene expression by attaching to other pieces of RNA, or even affecting histones or DNA
itself. Drugs are being developed that affect abnormal genes in cancer cells through
RNA interference.
Changes in genes
While we all have basically the same set of genes, we also have differences in our genes
that make each of us unique.
The ‘code’ or ‘blueprint’ for each gene is contained in chemicals called nucleotides.
DNA is made up of 4 nucleotides (A, T, G, and C), which act like the letters of an
alphabet. Each gene is made up of a long chain of nucleotides, the order of which tells
the cell how to make a specific protein.
Gene variants and mutations
Some people have changes in the nucleotides of a gene, which are known as variants
(or mutations). For example, one nucleotide ‘letter’ might be switched for another, or
one or more letters might be missing, when compared to most other people’s genes.
Gene variants can have different effects on the proteins they code for. For example:
• Some gene variants might not have any noticeable effect on the protein.
• Some variants might lead to very minor changes in the protein. For example, a
variant might result in a protein that’s shaped a little differently and is therefore a
bit less effective than the ‘normal’ version of the protein.
• Some variants might have larger effects. For example, a variant might result in a
protein that doesn’t work at all.
Gene variants that lead to changes in proteins can affect all of the cells with that
variant, which might even affect the whole body.
The overall effects of some gene variants might not necessarily be ‘good’ or ‘bad.’ For
example, gene variants account for differences in people’s hair or eye color. On the
other hand, some variants can lead to a disease (such as cancer) or increase the risk of
a disease. These are referred to as pathogenic variants. (These are also what many
people think of when they hear the term mutation.)
Inherited versus acquired gene mutations
Gene variants, including mutations, can be either inherited or acquired.
An inherited gene mutation, as the name implies, is inherited from a parent, so it’s
present in the very first cell (once the egg cell is fertilized by a sperm cell) that eventually
becomes a person. Since all the cells in the body came from this first cell, this mutation
is in every cell in the body, and can also be passed on to the next generation. This tyo
mutation is also called a germline mutation (because the cells that develop into eggs
and sperm are called germ cells) or a hereditary mutation.
It typically takes more than one gene mutation for a cell to become a cancer cell. But
when someone inherits an abnormal copy of a gene, their cells already start out with
one mutation. This makes it easier (and quicker) for other mutations to happen, which
can lead to a cell becoming a cancer cell. This is why cancers related to inherited
mutations tend to occur earlier in life than cancers of the same type that are not
inherited.
Inherited gene mutations are not the main cause of most cancers.
An acquired gene mutation is not inherited from a parent. Instead, it develops at some
point during a person’s life. Acquired mutations occur in one cell, and then are passed
on to any new cells that come from that cell. This mutation cannot be passed on to a
person’s children, because it doesn’t affect their sperm or egg cells. This type of
mutation is also called a sporadic mutation or a somatic mutation. Acquired mutations
can happen for different reasons. Sometimes they happen when a cell’s DNA is
damaged, such as after being exposed to radiation or certain chemicals. But often
these mutations occur randomly, without having an outside cause. For example, during
the complex process when a cell divides to make 2 new cells, the cell must make
another copy of all of its DNA, and sometimes mistakes (mutations) occur while this is
happening. Every time a cell divides is another chance for gene mutations to occur. The
number of mutations in our cells can build up over time, which is why we have a higher
risk of cancer as we get older. Acquired gene mutations are a much more common
cause of cancer than inherited mutations.
Other ways gene activity can be changed
Some of the changes inside cells that can lead to cancer don’t involve gene variants or
mutations. Cells can turn some of their genes on and off in other ways, and some of
these might also affect how a cell grows and divides.
As mentioned earlier, different genes are more active in some cells than in others. Even
within a certain cell, some genes are active at some times and inactive at others.
Turning these genes on and off isn’t done by changing the DNA sequence (as is the case
with variants and mutations). Instead, the changes in gene activity occur by other
means known as epigenetic changes.
There are several types of these changes:
• DNA methylation: In this type of change, a small chemical group called a methyl
group is attached to the DNA so that the gene can’t start the process of making
the protein it codes for. This basically turns off the gene. On the other hand,
removing the methyl group (in a process called demethylation) can turn a gene
on.
• Histone acetylation/histone modification: Chromosomes are made up of
strands of DNA wrapped around proteins called histones. Histone proteins can
be changed by adding (or subtracting) a small chemical group called an acetyl
group. Adding acetyl groups (acetylation) can activate (turn on) that part of the
chromosome, while taking them away (deacetylation) can deactivate it (turn it
off).
Drugs called histone deacetylase (HDAC) inhibitors can help in the treatment of
some types of cancer by turning on genes that help control cell growth and
division.
• RNA interference: Inside each cell, DNA acts as long-term storage for our
genes. But DNA isn’t in the same part of the cell where proteins are made. For a
protein to be made, a copy of its genetic code (in the form of messenger RNA, or
mRNA), needs to be made from the DNA first. This piece of mRNA can then bring
the instructions to the part of the cell where proteins are made. mRNA is only
used for a short time to make the protein, and then it’s broken down. If the cell
needs more of that protein, it makes more mRNA.
• RNA interference is another way cells can turn off genes. A cell can make other
forms of RNA that stick to mRNA. This can cause the mRNA to break down or
stop it from delivering its code.
Drugs are being developed to target the forms of RNA involved in RNA
interference. This might help turn off specific genes that cause cancer.
How changes in genes can affect cancer risk
Some genes normally help control when our cells grow, divide to make new cells, repair
mistakes in DNA, or cause cells to die when they’re supposed to. If these genes aren’t
working properly, it can affect cancer risk. For example:
• Changes in genes that normally help cells grow, divide, or stay alive can lead to
these genes being more active than they should be, causing them to become
oncogenes. These genes can result in cells growing out of control.
• Genes that normally help keep cell division under control or cause cells to die at
the right time are known as tumor suppressor genes. Changes that turn off these
genes can result in cells growing out of control.
• Some genes normally help repair mistakes in a cell’s DNA. Changes that turn off
these DNA repair genes can result in the buildup of DNA changes within a cell,
which might lead to them growing out of control.
DNA changes that create oncogenes or that turn off tumor suppressor genes or DNA
repair genes might lead to cancer, although typically it takes several gene changes
before a cell becomes a cancer cell.
Changes in some other genes don’t lead to cancer directly, but they might still make
someone more likely to get cancer. For example, some gene changes can limit how well
the body breaks down some of the toxins in tobacco smoke. Among people who smoke,
people with these kinds of gene changes might be more likely to get lung and other
smoking-related cancers.
Gene changes can also play a role in other conditions that might impact cancer risk. For
example, some gene variants can affect body weight. People with extra body weight are
more likely to get some types of cancer, so these variants might also indirectly affect
cancer risk.
Gene variants and other changes are common. We all have them, and their effects can
add up to influence our cancer risk.
Chapter-4 Oncogenes
The development of this field came about through a series of historical accidents, rather
than testing of well formulated hypotheses. The first oncogenes were discovered as a
byproduct of the research on RNA tumor viruses. The putative oncogene was initially
imagined as a viral gene, capable of transforming normal into malignant cells,
particularly if transmitted vertically from parent to offspring in susceptible animals (42).
It turned out, however, that vertically transmitted RNA tumor viruses do not carry any
oncogenes. They do not transform cells in vitro but may cause leukemia or mammary
tumors in vivo, provided that the hosts are genetically and physiologically susceptible.
They may act by insertional activation of a cellular oncogene that happens to be
adjacent to their integration site.
The transforming oncogenes that can change normal into malignant cells in vitro and
cause tumors at the site of inoculation in vivo after a short latency period were found in
the highly unnatural group of the acute (directly acting) PNA tumor viruses. They turned
out to be of cellular rather than viral origin. Originally, they must have been picked up by
accidental illegitimate recombination, facilitated by the retroviral lifestyle that consists
of a perpetual series of two-way transitions between the freely movable viral RNA stage
and the integrated proviral DNA. Subsequently, they have been progressively molded
and modified by the artificial selection of the investigator for higher tumorigenicity. The
resulting, highly oncogenic virally transduced v-oncogenes differ from their cellular
progenitors by several mutational or other structural changes.
It is both educational and ironical that this artefact of laboratory experimentation, that
does not correspond to any natural tumorigenic process in man or animals, should have
contributed the most important information about cell growth and division controlling
genes so far. The known oncogenes fall into 6 quite unrelated categories that have one
common denominator: they all participate in the regulation of cell division. Like other
‘household’ genes, i.e. genes required by all cells for basic cellular functions, they have
been highly conserved by evolution. They are closely similar in all vertebrates, and
several oncogenes have close homologues in invertebrates like drosophila or yeast.
They are not found in prokaryotes, however.
The presently known, &odd oncogenes fall into the following categories:
1. Growth factors. The cellular counterpart of sis, a simian sarcoma virus derived
oncogene, codes one of 2 polypeptide chains that constitute platelet-derived
growth factor. PDGF is normally released by thrombocytes and stimulates the
division of fibroblasts, as part of the normal mechanism of wound healing.
Illegitimate activation of the sis gene in a fibroblast, that is programmed to
respond to PDGF but does not normally produce it, e.g. by viral transduction,
leads to a self stirnulatory autocrine cycle (118). This intellectually attractive
mechanism can be shown to work in a variety of laboratory models, but it is not
clear if and to what extent it contributes to natural tumorigenesis. Still, it is clear
that constitutive production of growth factors is one of the potentially important
mechanisms of oncogene action.
2. Growth factor receptors. The erbB oncogene, originally isolated from chicken
erythroleukemia, codes for the epidermal growth factor (EGF) receptor (24), fms
codes for the colony stimulating factor (CSF) receptor that plays an important
regulatory role in the hemopoetic system, and the product of the erbA gene was
recently identified as a thyroid hormone receptor. The normal receptor gene may
become pathologically activated by a structural change, such as the truncation
of its extracellular, ligand binding part. This may lead to the continuous triggering
of cell division.
3. Protein kinases. the oldest known oncogene, (from the Rous sarcoma virus), or
abf, originally isolated from a mouse leukemia virus, can serve to exemplify the
oncogenes of the protein kinase category. Their protein products are often
associated with the inner surface of the plasma membrane. They phosphorylate
(introduce a phosphate group) preferentially tyrosine (tyrosine kinases) or, less
frequently, serine or threonine. Oncogenic activity is dependent on structural
changes in the gene, usually associated with a high kinase activity. The natural
protein substrate of the kinase is not known and its transforming mechanism is
not understood. It is assumed that it may act by changing the function of a
membrane receptor.
4. Signal transducers. The ras oncogene family is involved in signal transduction
from the membrane receptor to the cell interior. Oncogenic activation is due to a
point mutation (86, 104). While this point mutation clearly impairs the normal
function of the protein, the precise biochemical mechanism involved in the
transforming effect is not known.
5. Nuclear oncogenes. Myc, myb and fos code for DNA binding nuclear
phosphoproteins that can trans-activate other genes, stimulate DNA replication
and, when constitutively expressed after structural and/or regulatory changes,
may stimulate cells to replicate and/or can prevent them from terminal
differentiation and thus from leaving the proliferating compartment.
6. Transcription factors. The recent discovery of the jun oncogene and its homology
with API, a known transcription factor has brought yet another group of cellular
regulators under the oncogene umbrella. Its pathogenic activity is probably due
to structural changes.
The oncogenes can thus be regarded as the pathologically activated forms of cellular
genes that are normally involved in the control of cell division and associated growth or
regulatory processes. They can contribute to tumor development either as a result of
constitutional activation that prevents them from following regulatory signals or due to
structural changes that incapacitates their normal signalling function. Much of the
evidence comes from laboratory experimentation, often in quite artificial model
systems. In the following, I shall review the evidence that shows the role of oncogene
activation in the natural history of animal and human malignancies.
Mutation-activated ras genes have been found in bladder, colon, lung, pancreas and
skin carcinomas, neuroblastomas, sarcomas and other types of human malignancies.
Their biological activity has been detected by in vitro transformation of established
rodent fibroblast lines. Ras-activation is not regularly associated with any human tumor.
It is therefore usually assumed that it represents a phenomenon related to a later
progression of the malignancy. Its variable occurrence reflects the availability of several
alternative pathways, as in other examples of tumor progression.
Oncogene activation by chromosomal translocation shows a different picture. It occurs
regularly in certain hemopoetic malignancies and provides the most compelling case
for the mandatory involvement of a specific oncogene activation event in the genesis of
naturally occumng tumors. The 2 most regular and most extensively studied
translocations are represented by the juxtaposition(placement next to) of the c-myc
gene to sequences from one of the 3 immunoglobulin (Ig) loci in Burkitt’s lymphoma
(BL), mouse plasmacytoma (MPC) and rat immunocytoma (RIC), and by the fusion of
the c-abl onco gene with the so-called bcr sequence in Philadelphia chromosome (Phl)
positive chronic myelogenous leukemia.
The mandatory role of the Ig-myc juxtaposition in the genesis of Burkitt’s lymphoma,
mouse plasmacytoma and spontaneous rat immunocytoma has been deduced from
the extraordinary, nearly 100% regularity of the translocation in these otherwise quite
unrelated tumors. This has been confirmed experimentally by facsimile experiments.
Introduction of an immunoglobulin enhancer (Emu)-myc construct into mouse zygotes
has led to the appearance of pre-B and B-cell lymphomas in more than 90 of the derived
animals. Following treatment with mineral oil, plasmacytomas appeared that did not
contain the Iglmyc translocation. Translocation-free plasmacytomas could also be
obtained by infecting genetically susceptible mice with a myc-carrying retroviral
construct and exposing them to pristane. These experiments have conclusively proven
the oncogenicity of activated rnyc genes for cells of the B lymphocyte lineage. The
tumors were still monoclonal, however, indicating the need for additional changes. The
constitutionally activated myc-gene probably acts by preventing the cells from terminal
differentiation and thus from leaving the proliferating compartment.
The constitutive switch-on of myc by a juxtaposed immunoglobulin locus exemplifies
the activation of an oncogene by a regulatory change in the production of the
oncoprotein. The Philadelphia (Phl) chromosome illustrates the contrasting example,
based on a major structural change in the oncoprotein, brought about by a specific
chromosomal translocation. The 9;22 translocation fuses 2 genes, the truncated c-abl
oncogene on chromosome 9 and the bcr sequence on chromosome 22. The resulting
210 kD fusion protein differs from the normal 145 kD c-abl protein. The mechanism
whereby the abnormal protein generates CML is not known.
The activated forms of abl are versatile oncogenes that can act in different target cells.
Unlike the equally or even more versatile members of the myc-family that code for
nuclear, DNA-binding phosphoproteins, the abl-protein is a tyrosine kinase that exists in
a cytoplasmic and an inner membrane-bound form. V-abl can transform both
fibroblasts and pre-B cells in vitro. Together with rnyc, it can contribute to the
development of mouse plasmacytoma. It can cause T-cell leukemia and lymphoma
after introduction into the thymus. Its contribution to human leukemia is profound but
quizzical. In CML, the Phl positive bone marrow cells simultaneously express the
normal 145 K cabl protein and the 210 K bcrlabl fusion protein. These cells are still fairly
normal, since they can differentiate into functional cells of the erythroid and
megakaryocytic series and can also generate part of the normal B-lymphocyte
population. They may overproduce granulocytes, but the myeloid lineage can also
function normally during long periods of remission. Phl carrying cells must have a
subtle but pervasive selective advantage, however, since they gradually replace the
entire normal bone marrow.
Blast crisis represents the ‘true’ leukemic phase of CML. It is probably due to additional
changes unrelated to the Phi chromosome as such, although duplication of the Phi
chromosome is one of the most frequently found genetic changes. Trisomy of
chromosome 8 and deletion of part of chromosome 17 are the other 2 frequently found
changes. Less common chromosomal aberrations have been described as well. The
progression of CML to the blast phase is one of the clearest and best studied examples
of tumor progression that can follow one or several alternative pathways.
The Phl positive form of acute lymphoblastic leukemia differs from the CML associated
bcrlabl translocation at the molecular level. It generates a 195 kD protein with high
kinase activity. This anomaly is not compatible with undisturbed normal differentiation
Why are the translocations so strictly limited to certain, sharply defined forms of
neoplasia and why is always the same ancogene activated in a given tumor of this
category? This can be viewed in relation to the strict differentiation-lineage and stage
dependant tumorigenicity of all activated oncogenes. Each oncogene must be
expressed in its own, often highly specific, ‘differentiation window’. Thus, an activated
oncogene can only transform a cell at a certain stage of the cells’ differentiation. In the
case of the Iglmyc translocations, molecular evidence suggests that the myc-carrying
chromosome breaks at random, as a rare accident during chronically stimulated cell
division. The break can occur on both sides of the gene or even within the gene, as long
as the coding exons are spared. The breakage of the Ig gene is not random, however. It
involves the normal target sites of the physiological DNA rearrangement that takes
place during B-cell differentiation, suggesting that the mistaken action of a
physiological recombination enzyme may be responsible for the illegitimate
translocation event.
This reasoning implies that other oncogenes should be equally transposable by similar
accidents. Yet, only crnyc is involved in the translocations associated with the 3 tumors
BL, MPC, and RIC. The concept of the ‘differentiation window’ implies that the activation
of rnyc is more likely to drive the preneoplastic cell forward along the tumorigenic
pathway compared to the activation of other oncogenes, as far as these 3 tumors are
concerned. We have suggested that the vulnerable cell is a B-lymphocyte that has
expanded under the impact of an antigenic stimulus and is programmed to return to the
resting, Go stage after the cessation of the stimulus. At this time point the translocation
accident occurs. The cell has already switched its phenotype to what corresponds to a
resting, not an activated immunocyte, can therefore not come to rest but remains in
cycle. The antigenic phenotype of the BL cell resembles long lived, germinal center
memory cells, not activated immunoblasts. Moreover, the BL cell expresses some of the
polymorphic determinants of the major histocompatibility complex (MHC) class 1
antigens at a lower level than actively growing immunoblasts. Even though this must be
regarded as a by-product of the BL phenotype, it may obviously facilitate the escape of
the cell from T-cell dependent immune surveillance.
It would be logically expected that other oncogenes should be open to a similar
mechanism of activation in lymphomas of other types that arise from different
precursors than BL, and that other genes that rearrange during normal development
should be equally eligible translocation sites as the Ig loci. Both expectations have been
fulfilled. Other B-cell lymphomas carry translocations that have juxtaposed Ig loci with
other putative oncogenes, and rearranging T-cell receptor (TCR) genes can serve as
translocation sitesain some T-cell derived leukemias. In follicular lymphor, chronic
lymphocytic leukemia and a number of other B-cell derived malignant conditions, the
frequent 11;14 and 14;18 translocations were found to break chromosome 14 in the
same region of the Ig heavy chain (H) gene.
The joining fragment from chromosome 11 contains a putative oncogene, bcl-1, and the
fragment from chromosome 18 contains another, bcl-2. These translocations are not as
regular as the myclig juxtaposition but the bcl-21lg rearrangement is a fairly regular
feature of follicular lymphoma.
In T-cell leukemias, the break affects the gene for the alpha chain of the TCR at band
14qll. This location is readily distinguished from the more distal IgH locus at 14q32, the
breakpoint in the B-cell derived tumors. Myc is one of the oncogenes that can be
transposed to the TCR alpha site, although much less regularly than in the B-cell
derived tumors. In addition, several new putative oncogenes designated.
Future molecular analysis of tumor-associated translocations and other chromosomal
changes may be expected to reveal the existence of new, previously unknown
oncogenes. There is no reason to expect that all potential oncogenes would have been
picked up by the rare accidents of recombination with a retrovirus, or by other current
laboratory methods, like DNA-mediated transformation in vitro.
Oncogene amplification. Gene amplification is a well known phenomenon in the field of
drug resistance. Chronic exposure of bacteria or leukemic cells to the folk acid
antagonist, methotrexate, leads to the amplification of the dehydrofolate reductase
(DHFR) gene, coding for an enzyme that detoxifies the drug. The degree of amplification
may increase with increasing drug levels. The amplified genes may assemble into new
chromosome regions in the leukemia cells, often referred to as homogeneously staining
regions (HSR), due to the absence of the normal, banded chromosome pattern. They
can also appear as multiple small chromosome-like elements, called double minutes
(dms). HSR and dms are mutually exclusive, as a rule. Gene amplification is also readily
detectable by molecular hybridization, if the appropriate gene probe is available. It may
or may not be associated with detectable dms or HSR elements at the cytogenetic level.
Removal of methotrexate leads to the gradual loss of the amplified genes. Amplification
of drug resistance genes in drug treated cells and its reversal on cessation of the
treatment looks superficially as an induced adaptive response, but it is not. Many genes
can be amplified in cells exposed to toxic agents, including chemical carcinogens (66).
This is probably part of an SOS reaction. Cells that happen to amplify a gene that
provides them with a selective advantage under the actual conditions -as DHFR in the
presence of methotrexate-will proliferate preferentially.
A wide variety of solid and hemopoetic tumors have been found to harbor amplified
oncogenes (3, 18, 98, 103). Genes of the myc family are amplified most frequently. In
small cell lung carcinoma (SCLC), Minna and his associates (69) have found that myc
amplification is correlated with a ‘variant tumor cell phenotype’, characterized by
increased invasiveness, high metastatic ability and morphological and enzymatic
changes associated with poor prognosis. Interestingly, any one of the 3 known
mycgenes could be amplified alternatively. N-myc, originally discovered through its
amplification in neuroblastoma (4), is one of the alternatives to c-myc, while the third,
L-myc, has been discovered through its amplification in some of the variant SCLCs.
These findings suggest that myc amplification can convey a growth advantage on the
tumor cell, particularly when the cell has been displaced into a foreign tissue
environment. The alternating amplification of the 3 myc-genes suggests a functional
equivalence between the 3 genes as far as their contribution to tumor development is
concerned.
In order to proceed beyond the present descriptive studies of oncogene amplification in
relation to the clinical course, experimental systems will have to be found where
amplification waxes and wanes, depending on the growth conditions. We have recently
identified SEWA, a polyoma virus induced mouse ascites sarcoma, as a suitable system
for this purpose. Dms have been discovered in this tumor and were later found to
contain amplified c-mycgenes (68, 95). We have recently found that myc-amplification
is maintained while the tumor is propagated in the ascites form but is lost upon solid
subcutaneous passage. Myc-amplification thus conveys a growth advantage on this
tumor but only when it grows in the form of freely dissociated cells.
Experiments with multipotential teratoma cells have shown that cells dislocated from
their normal tissue environment can be inhibited by tissue specific growth controlling
and differentiation inducing factors (80). The cmyc protein can stimulate DNA
replication. It is conceivable that myc-amplification acts by increasing the intrinsic
growth potential of the cell, and/or decreasing its responsiveness to differentiation
inducing factors. This could facilitate metastatic or invasive growth of dislocated tumor
cells. HL60, an established myelocytic leukemia line that contains approximately 40-60
myc-genes per cell (18) is another case in point. Leukemia cells of this type do not
usually grow as continuous lines because they differentiate after explantation. HL60
can also be induced to differentiate terminally by non-specific agents. Differentiation is
preceded by the down-regulation of the amplified myc-genes (87). Analogous findings
have been made with neuroblastoma cells in relation to N-myc.
Progressive tumor growth is thus often the outcome of a balance between the action of
structurally or functionally altered genes that tend to push the cell forward and of genes
that prompt them to respond to physiological growth inhibitory forces. In the following
section, I shall discuss the latter group.

Chapter-5 Tumor suppressor genes (emerogenes)
The category of genes that can suppress transformation or tumorigenicity may be as
diversified as the oncogenes or even more diversified. The constitutive activation of a
‘growth-factor oncogene’ for example, may be canceled by the loss or dysfunction of
the corresponding receptor or by a roadblock elsewhere within the complex pathway of
signal transmission. Oncogene-induced blocks to cell maturation may be overcome by
strong inducers or circumvented by the use of alternative pathways. This chapter
reviews the fragmentary but firm evidence that shows the existence of such
mechanisms.
Suppression of tumorigenicity by somatic hybridization
A large variety of spontaneous, virally, and chemically induced tumors become low- or
nontumorigenic after fusion with fibroblasts, lymphocytes, or macrophages (7, 37, 38,
50, 54, 91, 97, 100, 120). Reappearance of tumorigenicity after chromosome loss was
found to occur at variable rates, depending os berability of each hybrid combination.
The suppression of tumorigenicity by cell hybridization can be discussed in genetic or
epigenetic terms that are not mutually exclusive. If genetic losses play an essential role
in the evolution of the malignant phenotype, the normal cell genome may act by genetic
complementation. In cases where the neoplastic transformation is due to a blockage of
maturation, e.g. by a dominantly acting oncogene, the normal partner cell may impose
its own differentiation program on the hybrid. Stanbridge has concluded that ‘the hybrid
cell takes on the phenotypic signature of the normal parental cell, regardless of the
origin of the malignant parental cell’.
The identification of chromosomes from the normal parent that are regularly lost in the
highly malignant hybrids, was helpful in mapping the location of the relevant suppressor
genes. Human-human hybrids were studied most extensively. Stanbridge et al. (101)
found that the appearance of tumorigenicity in hybrids of HeLa cells and normal
fibroblasts was associated with the loss of one copy of chr 11 and one copy of chr 14.
Klinger’s group (45, 46, 55) provided similar evidence for human chr 11, whereas
Benedict et al. (9) implicated human chr 1 and possibly chr 4 in the suppression of the
HT 1080 fibrosarcoma by normal fibroblasts. This is not necessarily a contradiction. The
tumorigenic phenotype may be suppressed by functionally different mechanisms,
depending on the transforming gene and the phenotype of the normal partner cell. The 2
malignant partners of these crosses, Hela and HT 1080, produced nontumorigenic
hybrids when fused with each other, suggesting genetic complementation between
cells that carry different genetic lesions. HT 1080 carries a mutationally activated N-ras
allele. Corresponding losses were found in tumors that carry mutated ras, including
chemically induced mouse skin carcinomas (83), thymic lymphomas (35) and a variety
of human tumors and derived cell lines. It is therefore conceivable that the normal ras
may antagonize the tumorigenic effect of the mutated allele. It was particularly
suggestive that the progression of chemically induced mouse skin papillomas to
carcinoma was accompanied by the amplification of the mutated ras or the loss of the
normal allele or both.
The suppression of tumorigenicity in hybrids between normal cells and tumor cells
transformed by activated oncogenes may occur at different levels. Down-regulation of
transcription has been demonstrated for u-src, but it is more the exception than the
rule. It is more frequent that suppression acts beyond the level of oncoprotein
production. This was found in SV40 transformed cells (41, 92) and particularly often in
relation to rastransformed cells.
Geiser et al. (33) fused the human EJ bladder carcinoma line, which carries a
transforming, ras gene, with normal fibroblasts. The hybrids retained the transformed
phenotype in vitro, but did not grow in nude mice. Tumorigenic hybrids that grew in nude
mice appeared on serial cultivation. The mutated ras p21 protein was present at the
same level in tumorigenic and nontumorigenic hybrids. Insertion of the c-H-ras gene
into the cells (transfection) increased the amount of p21, but did not induce
tumorigenicity. Suppression of transformation in the absence of any change in p21
expression was also demonstrated in a Chinese hamster and a mouse system. Isolated
from Kirsten sarcoma virus-transformed murine fibroblasts were found to contain a
functionally intact viral oncogene. Their p21 level was as high as in the original
transformants, but they were resistant to retransformation by activated ras of either
cellular or viral origin. Somatic hybridization of the revertants with both nontransformed
and transformed cells of the same lineage generated nontransformed hybrids. The
revertants could also suppress src, fes, K-, H-, and N-ras and mutated human H-ras
transformants, but not mos, sis, fms, ras, polyoma, SV40, and chemically transformed
cells of the same origin.
Src and fes encode oncoproteins unrelated to ras. The common suppression pattern
suggests that the dominant reversion imposes a block on a transformation pathway that
converges in these. Raf and mos are believed to act at a level beyond the ras-dependant
signalling pathway. The analysis of the suppression patterns provides a new approach
towards the definition of these pathways in cells transformed by different oncogenes.
The mapping of suppressor genes by the relatively cumbersome method of somatic
hybridization will probably be replaced by the more direct microcell-mediated transfer
of single chromosomes (log).
Chapter-6 Family Cancer Syndromes
When a gene change that greatly increases cancer risk runs in a family, it is often
referred to as a family cancer syndrome. Other terms that you might hear include
inherited cancer syndrome or genetic cancer syndrome.
It’s important to understand that not every cancer that seems to run in a family is
caused by a family cancer syndrome. About 1 in 3 people in the United States will
develop cancer during their lifetime, so it’s not uncommon to have many cancers in a
family. Sometimes, cancer might be more common in certain families because family
members share certain behaviors or exposures that increase cancer risk, such as
smoking, or because of other factors that can run in some families, like obesity.
But cancer can sometimes be caused by an abnormal gene that is passed from
generation to-generation. Although these cancers are often referred to as inherited
cancers, what is actually inherited is the abnormal gene that can lead to cancer, not the
cancer itself. Only about 5% to 10% of all cancers are known to be strongly linked to
gene defects (called mutations) inherited from a parent.
How do you recognize an inherited or family cancer syndrome?
Certain things make it more likely that cancers in a family are caused by a family cancer
syndrome, such as:
• Many cases of the same type of cancer (especially if it is an uncommon or rare
type of cancer)
• Cancers occurring at younger ages than usual (like colon cancer in a 20-year-old)
• More than one type of cancer in a single person (like a woman with both breast
and ovarian cancer)
• Cancers occurring in both of a pair of organs (like both eyes, both kidneys, or
both breasts)
• More than one childhood cancer in siblings (like sarcoma in both a brother and a
sister)
• Cancer occurring in the sex not usually affected (like breast cancer in a man)
• Cancer occurring in many generations (like in a grandfather, father, and son)
When trying to determine if cancer might run in your family, first collect some
information. For each case of cancer, look at:
• Who has the cancer? How are you related? Which side of the family are they on
(mother’s or father’s)?
• What type of cancer is it? Is it rare?
• How old was this relative when they were diagnosed?
• Did this person get more than one type of cancer?
• Did they have any known risk factors for their type of cancer (such as smoking for
lung cancer)?
• Has anyone in the family with or without cancer had genetic testing, and did that
testing show any abnormal genes?
Cancer in a close relative, like a parent or sibling (brother or sister), is more likely to be a
cause for concern for you than cancer in a more distant relative. Even if the cancer in a
distant relative was from a gene mutation, the chance of the abnormal gene being
passed on to you is less likely than with a closer relative.
It’s also important to look at each side of the family separately. Having 2 relatives with
cancer is more concerning if they are on the same side of the family. For example, it’s
more concerning if both relatives are your mother’s brothers (because they share some
of the same genes) than if one was your father’s brother and the other was your
mother’s brother.
The type of cancer matters, too. It is more concerning if many relatives have the same
type of cancer than if they have several different kinds of cancer. Still, in some family
cancer syndromes, there’s an increased risk of different types of cancer. For example,
the risk of breast cancer and ovarian cancer is increased (as well as some other
cancers) in families with inherited breast and ovarian cancer syndrome. Colon and
endometrial cancer risk are increased in Lynch syndrome (also known as hereditary
non-polyposis colorectal cancer, or HNPCC).
Likewise, more than one case of the same rare cancer is more worrisome than cases of
a more common cancer. For some rare cancers, the risk of a family cancer syndrome is
relatively high with even one case.
The age of the person when the cancer was diagnosed is also important. For example,
colon cancer is rare in people younger than 30. Having close relatives under 30 with
colon cancer could be a sign of a family cancer syndrome. On the other hand, prostate
cancer is very common in elderly men, so if both your father and his brother were found
to have prostate cancer when they were in their 80s, it is less likely to be due to an
inherited cancer syndrome.
Certain kinds of benign (not cancer) tumors and medical conditions are sometimes also
part of a family cancer syndrome. For example, people with the multiple endocrine
neoplasia, type II syndrome (MEN II) have a high risk of a certain type of thyroid cancer.
They also may develop benign tumors of the parathyroid glands and can also get tumors
in the adrenal glands called pheochromocytomas, which are usually benign.
When many relatives have the same type of cancer, it’s important to note if the cancer
could be related to a risk factor like smoking. For example, lung cancer is commonly
caused by smoking, so having several cases of lung cancer in a family of people who all
smoke is more likely to be due to smoking than to an inherited or family cancer
syndrome.
Examples of family cancer syndromes
There are many family cancer syndromes. Some of these are discussed briefly here as
examples, but this is not a full list. See our information on specific cancer types to learn
more about their possible causes.
Hereditary Breast and Ovarian Cancer (HBOC) syndrome
Families with hereditary breast and ovarian cancer syndrome (HBOC) have family
members who have developed breast cancer and/or ovarian cancer. Often these
cancers are found in women who are younger than the usual age these cancers are
found, and some women might have more than one cancer (such as breast cancer in
both breasts, or both breast and ovarian cancer)..
Most often, HBOC is caused by an inherited mutation in either the BRCA1 or BRCA2
gene. Some families have HBOC based on cancer history, but don’t have mutations in
either of these genes. Scientists believe that there might also be other genes that can
cause HBOC that are not yet known.
The risk of breast and ovarian cancer is very high in women with mutations in either
BRCA1 or BRCA2.
This syndrome can also lead to fallopian tube cancer, primary peritoneal cancer, male
breast cancer, pancreatic cancer, and prostate cancer, as well as some others. Some
people might have more than one cancer. For example, a woman might have breast
cancer in both breasts, or both breast and ovarian cancer, or a man might have both
pancreatic and prostate cancer. Male breast cancer, pancreatic cancer, and prostate
cancer can be seen with mutations in either gene, but are more common in people with
BRCA2 mutations. In the US, mutations in the BRCA genes are more common in people
of Ashkenazi Jewish descent than in the general population.
Women with a strong family history of breast cancer and/or ovarian cancer may choose
to get genetic counseling to help estimate their risk for having a mutation in one of the
BRCA genes. The genetics professional can estimate the risk based on a person’s
history of cancer, the history of cancer in their family, and other factors. If they have a
high risk, they might choose to be tested for BRCA mutations (see Understanding
Genetic Testing for Cancer). If a BRCA mutation is present, the woman has a high risk of
developing breast cancer and ovarian cancer (as well as some other cancers). She can
then consider taking steps to find cancer early with screening tests and to lower her risk
of getting cancer.
Because breast cancer is rare in men, men with this cancer are often offered genetic
counseling and testing for BRCA mutations. Having a BRCA mutation can also affect a
man’s risk of some other cancers, such as prostate and pancreatic cancer. It can also
be helpful for a man’s close relatives to know that he has a mutation and that they might
be at risk.
If someone has a BRCA mutation, it means that their close relatives (parents, siblings,
and children) have a 50% chance of having the mutation, too. These relatives may wish
to be tested for the mutation, or even without testing may want to start screening for
certain cancers early or take other precautions to lower their risk of cancer.
HBOC is not the only family cancer syndrome that can cause breast or ovarian cancer.
For information about other genes and syndromes that raise the risk of these cancers.
Lynch syndrome (hereditary non-polyposis colorectal cancer)
The most common inherited cancer syndrome that increases a person’s risk for colon
cancer is Lynch syndrome, also called hereditary non-polyposis colorectal cancer
(HNPCC). People with this syndrome are at high risk of developing colorectal cancer.
These cancers are more likely to develop at earlier ages, often before the age of 50.
Lynch syndrome also leads to a high risk of endometrial cancer (cancer in the lining of
the uterus), as well as cancers of the ovary, stomach, small intestine, pancreas, kidney,
brain, skin, breast, prostate, ureters (tubes that carry urine from the kidneys to the
bladder), and bile duct.
Lynch syndrome is caused by a mutation in any of several mismatch repair (MMR)
genes, including MLH1, MSH2, MSH6, PMS2, and EPCAM. These genes are normally
involved in repairing damaged DNA. When one of these genes isn’t working, cells can
develop mistakes in their DNA, which might lead to other gene mutations and
eventually cancer.
Doctors and genetics professionals can check if you are likely to have Lynch syndrome,
based on your personal and family cancer history using certain criteria known as the
Amsterdam criteria and the revised Bethesda guidelines. Mutations in the genes that
cause Lynch syndrome can then be tested for with genetic testing.
For people who have colorectal, endometrial, or other cancers that are linked with
Lynch syndrome, the cancer cells can be tested for microsatellite instability (MSI).
Having MSI means that one of the MMR genes probably isn’t working properly. Having
normal findings (no MSI or MMR gene changes) suggests that a person probably does
not have Lynch syndrome. But if the MSI tests shows that some of the MMR genes are
not working, the person may have Lynch syndrome, and should be referred for genetic
counseling and possible testing. For more information about genetic testing.
Someone who is known to carry a gene mutation linked to Lynch syndrome may be
advised to start screening for colorectal cancer when they are younger (such as during
their early 20s), or take other steps to try to lower their risk of colorectal cancer. Women
with Lynch syndrome may be advised to start screening for endometrial cancer or take
other steps to try to lower their risk of this cancer.
If someone has Lynch syndrome, it means that their close relatives (parents, siblings,
and children) have a 50% chance of having the mutation that casues it, too. They may
wish to be tested, or even without testing they may want to start screening early for
certain cancers or take other precautions to help lower their risk of cancer.
Li-Fraumeni syndrome
Li-Fraumeni syndrome (also called the sarcoma, breast, leukemia, and adrenal gland
[SBLA] cancer syndrome) is a rare inherited syndrome that can lead to an increased risk
of a number of cancers, including sarcoma (such as osteosarcoma and soft-tissue
sarcomas), leukemia, brain (central nervous system) cancers, cancer of the adrenal
cortex, and breast cancer. These cancers often develop in relatively young adults or
even children.
People with Li-Fraumeni syndrome can develop more than one cancer in their lifetime.
They also seem to have a higher risk of getting cancer from radiation exposure, so
doctors treating these patients might try to avoid giving them radiation therapy when
possible.
This syndrome is most often caused by inherited mutations in the TP53 gene, which is a
tumor suppressor gene. A normal TP53 gene makes a protein that helps stop abnormal
cells from growing.
If someone has Li-Fraumeni syndrome, their close relatives (especially their children)
have an increased chance of having the mutation, too. Close relatives may wish to be
tested, or even without testing they may want to start screening for certain cancers early
or take other precautions to help lower their risk of cancer.
Other family cancer syndromes
You can learn more about the family cancer syndromes listed above, along with other
inherited syndromes and gene mutations that might affect a person’s risk for cancer, by
reading:
• Genetic Counseling and Testing for Breast Cancer Risk: Hereditary Breast and
Ovarian Cancer Syndrome (HBOC), BRCA1 and BRCA2 mutations, and other
specific gene mutations
• Genetic Testing, Screening, and Prevention for People with a Strong Family
History of Colorectal Cancer: Lynch syndrome, familial adenomatous polyposis
(FAP), and other specific gene mutations
• Genetic Counseling and Testing for People at High Risk of Melanoma: Specific
gene mutations
• Ovarian Cancer Risk Factors: Hereditary Breast and Ovarian Cancer Syndrome
(HBOC), Lynch syndrome, Peutz-Jeghers syndrome, MUTYH-associated
Polyposis, BRCA1 and BRCA2 mutations, and other specific gene mutations
• Risk Factors for Retinoblastoma: Hereditary Retinoblastoma
• Risk Factors for Kidney Cancer: von Hippel-Lindau disease, Cowden syndrome,
Birt-Hogg-Dube (BHD) syndrome
• Risk Factors for Soft Tissue Sarcomas: Neurofibromatosis, Tuberous sclerosis,
Gorlin syndrome
Genetic counseling and testing
People with a strong family history of cancer may want to learn more about their genes.
This may help the person or other family members plan their health care for the future.
Since inherited mutations affect all cells of a person’s body, they can often be found by
genetic testing done on blood or saliva (spit) samples. Still, genetic testing is not helpful
for everyone, so it’s important to speak with a genetic counselor first to find out if testing
might be right for you. For more information, see Understanding Genetic Testing for
Cancer.
Chapter-7 Gene Therapy for Cancer
Cancer occurrs by the production of multiple mutations in a single cell that causes it to
proliferate out of control. Cancer cells often different from their normal neighbors by a
host of specific phenotypic changes, such as rapid division rate, invasion of new
cellular territories, high metabolic rate, and altered shape. Some of those mutations
may be transmitted from the parents through the germ line. Others arise de novo in the
somatic cell lineage of a particular cell. Cancer-promoting mutations can be identified
in a variety of ways. They can be cloned and studied to learn how they can be
controlled.
Several methods such as surgery, radiation, and chemotherapy have been used to treat
cancers. The cancer patients who are not helped by these therapies may be treated by
gene therapy. Gene therapy is the insertion of a functional gene into the cells of a
patient to correct an inborn error of metabolism, to repair an acquired genetic
abnormality, and to provide a new function to a cell.
Two basic types of gene therapy have been applied to humans, germinal and somatic.
Germinal gene therapy, which introduces transgenic cells into the germ line as well as
into the somatic cell population, not only achieve a cure for the individual treated, but
some gametes could also carry the corrected genotype. Somatic gene therapy focuses
only on the body, or soma, attempting to effect a reversal of the disease phenotype by
treating some somatic tissues in the affected individual.
One of the most promising approaches to emerge from the improved understanding of
cancer at the molecular level is the possibility of using gene therapy to selectively target
and destroy tumor cells, for example, the loss of tumor suppressor genes (e.g. the P53
gene) and the over expression of oncogenes (e.g. K-RAS) that have been identified in a
number of malignancies. It may be possible to correct an abnormality in a tumor
suppressor gene such as P53 by inserting a copy of the wild-type gene; in fact, insertion
of the wild-type P53 gene into P53-deficient tumor cells has been shown to result in the
death of tumor cells. This has significant implications, since P53 alterations are the
most common genetic abnormalities in human cancers. The over expression of an
oncogene such as K-RAS can be blocked at the genetic level by integration of an
antisense gene whose transcript binds specifically to the oncogene RNA, disabling its
capacity to produce protein. Experiments in vitro and in vivo have demonstrated that
when an antisense K-RAS vector is integrated into lung cancer cells that over express K
RAS their tumorigenicity is decreased.
Despite the promise of such approaches, a number of difficulties remain to be
overcome, the most important of which is the need for more efficient systems of gene
delivery. No gene transfer system is 100% efficient, unless germ-line therapy is
contemplated. During the past two decades, there have been major advances in our
understanding of how cancer develops, proving that cancer has a genetic basis. A series
of genetic abnormalities that accumulate in one cell may result in a pattern of abnormal
clonal proliferation. Our growing understanding of the genetic basis of cancer offers
new opportunities for the molecular prevention and treatment of cancer. There has
been a substantial growth in gene therapy, especially in the field of oncology since the
first experiment in human gene therapy began in 1990, with the aim of treating
adenosine deaminase deficiency. By the end of 1993, there were 45 approved trials by
US Recombinant DNA Advisory Committee, 30 of which are for the treatment of cancer.
This is, in part, became tumor cells can be manipulated ex vivo, while the affected
tissues from individuals with other genetic diseases often cannot.
More than 100 clinical applications of gene transfer into human patients for both
therapeutic and cell-marking purposes have now been approved in the USA and a
number of other countries. Trials for cancer gene therapy that have been approved in
the USA have involved malignancies that are considered incurable. This clinical
situation, which is unlike many genetic diseases for which life expectancy is measured
in years rather than weeks or months, has been considered more appropriate ethically
for untested technologies. For these reasons, applications of gene therapy to cancer
will continue to be the fastest growing area of human gene therapy.
TECHNOLOGIES
Gene therapy for the treatment of cancer has a wide variety of potential uses. There are
several potential strategies for gene therapy in the treatment of cancer.
Strategies of gene therapy for cancer
1. Enhancing the immunogenicity of the tumor, for example by introducing genes
that encode foreign antigens.
2. Enhancing immune cells to increase anti-tumor activity, for example by
introducing genes that encode cytokines.
3. Inserting a “sensitivity” or suicide’ gene into the tumor, for example by
introducing the gene that encodes HSVtk.
4. Blocking the expression of oncogenies, for example by introducing the gene that
encodes antisense K-RAS message.
5. Inserting a wild-type tumor suppressor gene, for example P53 or the gene
involved in Wilm’ tumor.
6. Protecting stem cells from the toxic effects of chemotherapy, for example by
introducing the gene that confers MDR-1.
7. Blocking the mechanisms by which tumors evade immunological destruction,
for example by introducing the gene that encodes antisense IGF-1 message.
8. Killing tumor cells by inserting toxin genes under the control of a tumor-specific
promoter, for example the gene that encodes diphtheria A chain.
Approaches to ex vivo gene transfer
1. Genetically engineered tumor cells
Various groups are investigating the production of autologous cellular vaccines for the
treatment and prevention of cancer. This is most commonly attempted by surgically
removing tumor cells from the patient, growing them in tissue culture and inserting
immunostimulatory genes in vitro. These cells are then reinjected into the patient in an
effort to induce a significant systemic immune response that will both destroy tumor
cells and protect the patient against a recurrence of the tumor. Treating cells that
produce cytokines has been shown to result in systemic immunity in mice. Alteration of
syngeneic tumors with the genes that encode IL-1 b, IL-2, IL-4, IL-6, TNFa, GM-CSF or r
interferon (6, 7) results in immunological destruction of the tumor cells in vivo.
In human gene therapy trials, patients are injected with either autologous or allogeneic
genetically modified tumor cells. These trials involved the insertion of retroviral vectors
carrying the gene that encodes either IL-2, TNFa or GM-CSF into melanoma, colorectal
renal cell carcinoma, neuroblastoma or breast cancer cells in vitro. One modification of
this technique is the insertion of the gene for either IL-2 or IL-4 into autologous
fibroblasts, which are then mixed with irradiated tumor cells from the patient and
reinjected. This approach has the advantage that growing fibroblasts in vitro is much
easier than culturing tumor cells from a large number of individuals. Besides modifying
tumor cells to produce immune activating cytokines, another strategy is to block the
production of insulin-like growth factor-1 (IGF-1). Many tumors such as breast cancer
produce high levels of IGF-1. Insertion of an antisense gene that stops production of
IGF-1 in the tumor allows immunological rejection of the genetically altered tumor after
reimplantation (8). Destruction of the tumor is mediated by cytotoxic T lymphocytes.
The precise mechanism by which IGF-1 mediates tumor protection in vivo remains
unclear.
2. Genetically engineered T lymphocytes
T lymphocytes have the capacity to hone in on tumor tissue. This property has been
used to deliver cytokines directly to tumor masses for human gene therapy. The
secretion of cytokines locally at the tumor site by the effector T lymphocytes will
enhance their anti-tumor activity and avoid the side-effects that result from the
systemic administration of cytokines. For the trial of TNF-modified tumor infiltrating T
lymphocytes, T lymphocytes are difficult to transduce with retroviral vectors and tend to
downregulate expression of the cytokine gene carried by the vector (9).
These two problems of poor gene transfer efficiency and poor cytokine expression have
so far limited the application of this approach, and have shifted the emphasis from
modification of T lymphocytes toward the genetic alteration of tumor cells, which are
much easier to grow in culture and more readily engineered.
3. Insertion of a sensitivity gene
Gene therapy uses the genes to activate a relatively nontoxic pro-drug to form a highly
toxic agent. The most widely studied system uses the thymidine kinase gene of the
Herpes simplex virus (HSVtk). The HSVtk gene confers sensitivity to the anti-herpes
drug, ganciclovir (GCV), by phosphorylating GCV to a monophosphate form (GCV-MP).
Phosphorylation to the triphosphate form (GCV-TP) by cellular kinases results in
inhibition of DNA polymerase, and leads to cell death. In this procedure, GCV kills
tumor cells which express KSVtk, and the adjacent cells that lack the gene are also
destroyed. This is termed the bystander effect phenomenon. To use the bystander effect
to kill human cancer in vivo, the irradiated ovarian tumor cells that contain the HSVtk
gene will be injected into the peritoneal cavity of patients, who will be given GCV. These
HSVtk-expressing cells will destroy bystander tumor cells in vivo.
4. Protection of hematopoietic stem cells
Protection of hematopoietic stem cells (HSCs) from the toxic effects of chemotherapy
by using the gene that confers multiple drug resistance type 1(MDR-1) is another
possible strategy for human cancer therapy. The MDR-1 gene (10) will be isolated from
tumor cells, where it functions to pump chemotherapy drugs (including daunorubicin,
doxorubicin, vincristine, vinblastine, VP-16, VM-26, taxol and actinomycin-D) from
within the cell. Transfer of a retroviral vector carrying the MDR-1 gene into bone marrow
stem cells and their subsequent reintroduction will protect stem cells in vivo from the
effects of large doses of taxol.
Genetic alteration of cancer cells in situ
1. Liposome-mediated gene transfer
The genetical modification of tumors in situ involves the direct injection of liposomes
containing an allogene that encoded HLA-B7, a foreign antigen that is transiently
expressed on the cell surface and includes an immune reaction against the altered
tumor cells. Anti-tumor immune response is significantly increased when some of the
tumor cells express foreign antigens on their cell surface. The transient expression of
immunostimulatory genes in tumors might have potential as a treatment and as a
vaccination against certain malignancies.
2. Retrovirus-mediated gene transfer
In vivo gene transfer using murine retroviral vectors has been applied to the treatment of
brain tumors. In this process, murine fibroblasts that are actively producing retroviral
vectors, so-called retro viral vector producer cells or VPCs, are implanted directly into
growing tumors. The gene transferred by the retroviral vectors into the surrounding
tumor cells is the HSVtk gene. The HSVtk gene should integrate only into the
proliferating tumor cells because retrovirus-mediated gene transfer is limited to
mitotically active cells. This technique resulted in transfer of the gene for HSVtk into 30
60% of brain tumor cells and was capable of mediating complete tumor destruction in
80% of patients.
More than 50% of the cancers can be eliminated completely, At least 10% of cells in a
tumor contain HSVtk, adjacent tumor cells that do not contain HSVtk are destroyed
through the bystander effect. No associated systemic toxicity or evidence of systemic
spread of the retroviral vectors is seen with this form of in vivo gene transfer. So far,
however, it is not clear whether this gene delivery system will suffice to eradicate the
larger, infiltrative human tumors.
Two protocols for in vivo gene transfer for cancer therapy have been approved for
clinical trials. Both entail the direct injection of a supernatant containing a retroviral
vector (RV) into tumor deposits. One group will inject two different RVs into
endobronchial non-small-cell lung cancers (4). The vectors will carry genes that target
the genetic mechanisms responsible for the malignancy: for example, if the lung tumors
are deficient in expression of the tumor suppressor gene, this gene will be used. In lung
cancers that overexpress the K-RAS oncogene, a vector containing an antisense K-RAS
gene will be used. Experiments in vitro have demonstrated that the introduction of both
such vectors can result in decreased tumorigenicity. Another group will inject a RV
containing a vector that encodes r-interferon directly into melanoma deposits.
PUBLIC PROS, CONS AND ARGUMENTS
Civic, religious, scientific, and medical group have all accepted, in principle, the
appropriateness of gene therapy for cancer of somatic cells in humans for specific
cancer. Somatic cell gene therapy is seen as an extension of present methods of
therapy that might be preferable to other technologies. It is considered that patients
should not be subjected to unreasonable risk of harm, excessive discomfort, or
unwanted of privacy, and that they should receive special care, monitoring, and
consideration.
Scientists and physicians acknowledge the fact that somatic-cell gene transfer is the
only form that is technically feasible and ethically acceptable for human use, and gene
therapy will revolutionize medicine. The development of gene transfer strategies for
human cancer is limited as much by our imagination as by current technology. It is
thought that a large number of projects about gene therapy for cancer will be needed to
provide very important information on the safety of the biologies, efficiency of gene
transfer and efficacy in humans.
It has been suggested that the researches in preclinical and clinical studies will be
necessary to evaluate the therapeutic benifit of such gene-based therapies for cancer.
For example, the main advantage that retroviral vectors have over vaccinia-based
vectors is that they are non-replicating, minimizing the concerns regarding the use of a
freely replicating virus in immunocompromised patients. Disadvantages of retroviral
gene delivery system are the complexity and high cost of the transfer procedure. People
are concerned with the safety of retroviral delivery system associated with the use of
viral vectors. All the evaluations of these therapeutic benefit of these methods await
imminent clinical trials.
The gene therapy tools for cancer currently in use are blunt, and will remain so until
solutions are found to the technical problems posed by the need for persist transgene
expression, specific targeting of foreign genes to the appropriate tissues, site-specific
integration of retroviral vectors and adeno-associated vectors, stable gene transfer into
post-mitotic cells, and the need to overcome the immune response to the gene transfer
vector and the transience of gene expression from non-integrating vectors.
The Scientific advisory panel to the National Institutes of Health’ public upbraiding of
gene therapy for cancer was mingled with the message that gene therapy is “not a
failure,” but a technology, which likes most innovative technologies, progresses slowly.
They also suggested that human experiments should be set up so that both positive and
negative results give us an answer, but so far, in human gene therapy experiments, there
is no certain answer.
Perhaps the biggest hurdle to better results with gene therapy for cancer are the gene
transfer vectors, which ferry the gene of interest into target cells. Although most of these
vectors are retrovirues, none is ideal, or perhaps even nearly ideal. It was also believed
that the low frequency of gene transfer as a major shortcoming in virtually all of the
existing trials and other failings were a lack of suitable controls in experiments.
Therefore, a suitable control is necessary for experiments.
The public thinks that researchers and media have oversold the current research in the
field of gene therapy for cancer, leading to an inaccurate perception of its success. This
problem will threaten the field and future public support of the field. One immediate
problem is the public’s inflated expectations about gene therapy for cancer may lead
some patients to relax compliance with treatment plans or alternative reproductive
choices in the belief that a gene treatment is close at hand.
Other genetics experts argue that the time has come to re-evaluate the approach taken
by most gene therapists, and perhaps even to redirect their effects. They are also a bit
concerned that they were not fulfilling the promise of gene therapy for cancer in any
obvious way at this point, and they suggested that more basic aspects of gene therapy
research for cancer will need to be emphasized. Some of patients with cancer made a
reproductive decision based on the feeling that gene therapy for cancer is “right around
the corner”.
Currently, NIH spends an estimated $200 million of its $11 billion annual budget on
gene therapy, while industry pumps an estimated $200 million annualy into the field. As
of June 1995, the majority of the 106 approved clinical protocols involved proposed
therapies for cancer. There are now 600 Americans enrolled in 100 clinical trials. Yet
after all the tests and all the hype, there is still no unambiguous proof that gene therapy
for cancer has cured, or even helped, a single patient. Gene therapy, because it is a
modification of the human genome, generates a level of concern different from other
therapies and therefore is deserving of continued public scrutiny.
No one denies that gene therapy for cancer holds extraordinary promise or that it will
eventually yield results. But critics have grown increasingly concerned that the initial
excitement led to a premature rush to get unproved gene therapies for cancer out of the
laboratory and into human patients. Researchers are still not sure which are the best
methods to transport genes into cancer cells. Nor have they figured out how to stop a
person’s own immune systems from rejecting what are, in effect, microscopic
transplants of foreign material.
Even more troubling are signs that financial considerations may have replaced scientific
rigor in determining how and when to use gene therapy for cancer. Some critics charge
that businessmen are pushing researchers too hard in order to get a quick return on
their investment, and that some doctors have been too hasty, launching clinical trials
early in the hopes of “cashing in when a large drug company buys their firm.
A number of therapies such as drug and chemotherapy treatments have been
developed over the years in an attempt to treat patients with cancer, most of them can
only ameliorate the symptoms rather than effect a cure. The possibility of gene therapy
opens a new area of therapeutics and hope for individuals afflicted with these cancer.
But several technical hurdles must be overcome before successful and complete cures
are possible for the cancers, and technologies must continually be improved upon if the
cancers are to be treated. Like all medical therapies, certain gene therapy will
ameliorate some, but not all, symptoms of a particular cancer. It seems likely that no
single vector system will be appropriate for treating all cancers or will cure all cancers.
Scientists think that clinical trials of gene therapies for cancer has been made possible
by two major technological advances: the ability to cle genes that constitute the genetic
basis of cancinogenesis or. That have therapeutic potential and the development of an
increasing number of gene transfer methods. Increasing numbers of cytokine and
sensitivity genes will present new opportunities for the selective destruction of cancer
cells, but the primary factor hampering the wide spread application of gene therapy for
human cancer is the lack of an efficient method of delivering genes in situ. Therefore,
developing strategies to deliver genes to a sufficient number of tumor cells to induce
complete tumor regression or restore genetic health remains a challenge. However, as
these obstacles are overcome, gene therapy will become a standard part of the practice
of oncology.
Before gene therapy can become the strategy of choice in a wide variety of clinical
settings, improvements in the efficiency of gene transfer into target cells and in the
maintenance of expression from the relevant transferred gene must occur. The problem
of efficient gene transfer will require not only further research to improve delivery
systems and vector constructions but also a parallel effort to understand the biology of
the target cells. Germline therapy would change the genetic pool of the entire human
species and future generations would have to live with that change. Because of these
ethical problems, a number of technical difficulties would make it unlikely that germline
therapy would be tried on human in future.
Chapter-8 Understanding Genetic Testing for Cancer Risk
What is genetic testing?
Genetic testing is the use of medical tests to look for certain mutations (changes) in a
person’s genes. Many types of genetic tests are used today, and more are being
developed.
Genetic testing can be used in many ways, but here we’ll focus on how it is used to look
for gene changes that are linked to cancer.
Genetic testing to help evaluate cancer risk
Predictive genetic testing is a type of testing used to look for inherited gene mutations
that might put a person at higher risk of getting certain kinds of cancer. This type of
testing might be suggested for:
• A person with a strong family history of certain types of cancer, to see if they
carry a gene mutation that increases their ist. If they do have an inherited
mutation, they might want to have screening tests to look for cancer early, or
even take steps to try to lower their risk. An example is testing for changes in the
BRCA1 and BRCA2 genes (which are known to increase the risk of breast cancer
and some other cancers) in people with several family members who have had
breast cancer.
• A person already diagnosed with cancer, especially if there are other factors to
suggest the cancer might have been caused by an inherited mutation (such as a
strong family history, if the cancer was diagnosed at a young age, or if the cancer
is uncommon, such as breast cancer in a man). Genetic testing might show if the
person has a higher risk of developing some other cancers. It can also help other
family members decide if they want to be tested for the mutation.
• Family members of a person known to have an inherited gene mutation that
increases their risk of cancer. Testing can help them know if they need screening
tests to look for cancer early, or if they should take steps to try to lower their risk.
Most people (even people with cancer) do not need this type of genetic testing. It’s
usually done when family history suggests that a cancer may be inherited (see below) or
if cancer is diagnosed at an uncommonly young age.
Who might benefit from genetic testing?
Genetic counseling and testing may be recommended for people who have had certain
cancers or certain patterns of cancer in their family. If you have any of the following, you
might consider talking to a genetic counselor about genetic testing:
• Several first-degree relatives (mother, father, sisters, brothers, children) with
cancer
• Many relatives on one side of the family who have had the same type of cancer
• A cluster of cancers in your family that are known to be linked to a single gene
mutation (such as breast, ovarian, and pancreatic cancers, which are
sometimes linked to BRCA gene mutations)
• A family member with more than 1 type of cancer
• Family members who had cancer at a younger age than normal for that type of
cancer
• Close relatives with cancers that are linked to rare hereditary cancer syndromes
• A rare cancer (in you or a family member), such as breast cancer in a man or
retinoblastoma
• A particular race or ethnicity (such as Ashkenazi Jewish ancestry, which is linked
to a higher risk of BRCA gene mutations)
• A physical finding that’s linked to an inherited cancer (such as having many colon
polyps)
• A known genetic mutation in one or more family members who have already had
genetic testing
• Lab tests of your cancer cells that show features that might be linked to an
inherited gene mutation
If you are concerned about a pattern of cancer in your family, cancer you’ve had in the
past, or other cancer risk factors, you may want to talk to a health care provider about
whether genetic counseling and testing might be a good option for you.
You need to know your family history and what kinds of tests are available. For some
types of cancer, no known mutations have been linked to an increased risk.
For more information on the types of cancer that may be linked to inherited genes.
What is genetic counseling?
Genetic counseling gives you information that you and your family can use to make
decisions about whether to get genetic testing
Genetic counselors have special training in the field of genetic counseling. Most are
board-certified, and some might have a license depending on the rules in their state.
Some doctors, advanced practice oncology nurses, social workers, and other health
professionals may also provide genetic counseling, although they might have different
levels of training in this field. If you are offered genetic counseling, it’s fair to ask about
their training in this area.
Before and after genetic testing, genetic counseling can help you understand what your
test results might mean, your risk of developing cancer, and what you can do about this
risk. It is your decision to have testing and what steps you take after.
Before you get tested
It’s important to find out how useful genetic testing might be for you before you do it.
Talk to your health care provider and plan on getting genetic counseling before the
actual test. This will help you know what to expect. Your counselor can also tell you
about the risks and benefits of the test, what the results might mean, and what your
options are.
Other types of genetic tests
Testing cancer cells for gene changes
Sometimes after a person has been diagnosed with cancer, the doctor will order tests
on a sample of cancer cells to look for certain gene or protein changes. These tests can
sometimes give information on a person’s outlook (prognosis), and they might also help
tell if certain types of treatment may be useful.
These types of tests look for acquired gene changes only in the cancer cells. These tests
are not the same as the tests used to find out about inherited cancer risk.
Home-based genetic tests
Some tests that look for gene changes can be bought without needing a doctor’s order.
For this type of testing, you purchase a test kit and send a sample of your DNA (often
from saliva) to a lab for testing. If you are considering using a home-based genetic test
(also known as a direct-to-consumer genetic test), you need to know what it’s testing
for, what it can (and can’t) tell you, and how reliable the test is.
Home-based tests do not provide information on a person’s overall risk of developing
any type of cancer. Sometimes these tests can sound much more helpful and certain
than they have been proven to be. It may sound like the test will provide an answer to
your specific health concern, such as your risk of hereditary cancer, but the test may
not be able to answer that question completely. For example, a test may look for
mutations in a certain gene, but it might not test for all of the possible mutations. So a
negative test result, even if accurate, may miss the bigger picture regarding your cancer
risk and what you can do to manage it. And you might not be provided with the
important context about the test results that a genetic counselor could provide.
Home-based genetic tests should not be used instead of cancer screening or genetic
counseling that may be recommended by a medical professional based on your
individual risk for cancer. Always consult with your doctor if you are considering or have
questions about genetic testing. Trained genetic counselors can help you know what to
expect from your test results.

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